# General parameters
obs_group,s,ql,"og_spi.fits[GROUPING]",,,"Observation Group to work with"
IC_Group,s,h,"$ISDC_IC_TREE/idx/ic/ic_master_file.fits[1]",,,"DOL of Instrument Characteristics master group"
IC_Alias,s,ql,"CONS",,,"Selection alias for Instrument Characteristics"
coeffDOL,s,h,"",,,"DOL of the gain coefficient file (leave empty for automatic access)"
startLevel,s,ql,"POIN",,,"Analysis level at which the analysis should begin"
endLevel,s,ql,"IMA",,,"Analysis level at which the analysis should end"
only_clean,b,ql,no,,,"Only cleaning the Group without stepping forward (yes/no) ?"
run_spiskymax,b,ql,yes,,,"Apply image reconstruction with spiskymax (yes/no) ?"
run_spiros,b,ql,yes,,,"Apply image/source reconstruction with spiros (yes/no) ?"
clobber,b,ql,yes,,,"Overwrite existing files?"
# parameters of sub-components
spipoint_pointing-dol,s,h,"spi/pointings.fits(SPI.-OBS.-PNT.tpl)",,,"output pointing data structure"
spi_gti_creation_rwgti,s,h,"spi/gti.fits(SPI.-OBS.-GTI.tpl)",,,"output gti data structure"
spi_gti_creation_det_id,s,ql,"0-84",,,"List of detectors and pseudo detectors to be used in analysis (-1 = single + PSD)"
spi_gti_creation_spimodes,s,h,"41 42 51 61",,,"SPI modes for which a GTI depending on data gaps should be created"
spi_gti_creation_attitude_stability,r,h,15,0.0,10800,"Accepted attitude stability tolerance to generate a GTI [arc min]"
spi_gti_creation_use_gtis,s,h,"ATTITUDE DATA_GAPS",,,"Input GTI names of all SPI GTIs (ATTITUDE DATA_GAPS USER)"
spidead_dead-time-dol,s,h,"spi/dead_time.fits(SPI.-OBS.-DTI.tpl)",,,"Output DS DOL: "
spidead_deadtimecorrection,r,ql,-1.0,,,"Dead time correction (fraction of live time) for pseudo detectors:"
spi_psd_optimise_inlibDOL,s,h,"",,,"PSD library DOL or filename (leave empty for automatic access)"
spi_psd_optimise_inalgDOL,s,h,"",,,"PSD algorithm parameter DOL or filename (leave empty for automatic access)"
spi_psd_optimise_ontime,r,hl,4000,,,"Constant ONTIME slice (seconds)"
spibounds_energy-boundaries-dol,s,h,"spi/energy_boundaries.fits(SPI.-EBDS-SET.tpl)",,,"Output DS DOL:"
# Binning information
spibounds_nregions,i,ql,1,,,"Number of regions:"
spibounds_regions,s,ql,"500,520",,,"Region bounds:"
spibounds_nbins,s,ql,"1",,,"Number of bins in regions:"
spibounds_bintype,s,h,"PI",,,"Energy Units (PI/PHA):"
spihist_outfile,s,h,"hist",,,"Name of output file:"
spihist_det-spec-dol,s,h,"spi/evts_det_spec.fits(SPI.-OBS.-DSP.tpl)",,,"Output DS DOL:"
spihist_dtype,i,h,1,1,3,"Output data units: (1) counts/bin, (2) counts/s/bin, or (3) cts/s/kev:"
spihist_psdtype,s,h,"raw",,,"Use on-board (raw) or Ground (prp) derived PSD localized flag"
spihist_detnums,s,h,"0-84",,,"Detectors to be processed:"
spihist_detsummed,b,hl,n,,,"Output is summed over detectors (per pointing):"
spihist_pntgsummed,b,hl,n,,,"Output is summed over pointings:"
spihist_tstart,s,h,"indef",,,"Start time for accumulations:"
spihist_tstop,s,h,"indef",,,"Stop time for accumulations:"
spihist_outputformat,s,h,"ISDC",,,"Output file format (PHA/ISDC):"
spiback_back-mod-idx,s,h,"spi/back_model_index.fits(SPI.-BMOD-DSP-IDX.tpl)",,,"Name of output background model data file: "
spiback_back-mod-dol,s,h,"back_model.fits(SPI.-BMOD-DSP.tpl)",,,"Name of output background model index file: "
spiback_back-const,s,h,"YES",,,"Do you want a constant background component? (yes/no): "
spiback_back-const-value,r,h,2.0e-5,,,"Constant background level in each detector (cnts/det/sec/kev): "
spiback_back-linear,s,h,"NO",,,"Do you want a linear background component? (yes/no): "
spiback_back-linear-mjd0,r,h,0.0,,,"Start time of the linear background component as Modified Julian Date: "
spiback_back-linear-slope,r,h,0.1,,,"Slope of the linear background component (cnts/sec/det/kev/day): "
spiback_back-sincos,s,h,"NO",,,"Do you want a sinusoidal background component (yes/no):" 
spiback_back-sincos-mjd0,r,h,0.0,,,"Phase of the SIN-COS background component as Modified Julian Date: " 
spiback_back-sincos-period,r,h,0.15,,,"Period of the SIN-COS component (days): " 
spiback_back-sin-amp,r,h,1.0,,,"Amplitude of the SIN background component (cnts/det/sec/kev): " 
spiback_back-cos-amp,r,h,0.0,,,"Amplitude of the COS background component (cnts/det/sec/kev): " 
spiback_back-SCHK,s,h,"NO",,,"Name of SCHK count rate archive for background model: "
spiback_back-orbital-POWL,s,h,"NO",,,"Parameters for powerlaw variations (ampl,index): "
spiback_back-orbital-COS,s,h,"NO",,,"Parameters for COSINE variations (ampl,phase,period): "
spiback_back-orbital-SIN,s,h,"NO",,,"Parameters for SINE variations (ampl,phase,period):"
spiback_back-orbital-SIN+1,s,h,"NO",,,"Parameters for SINE+1 variations (ampl,phase,period): "
spiback_back-orbital-COS+1,s,h,"NO",,,"Parameters for COSINE+1 variations (ampl,phase,period): "
spi_psd_effigen_outpefDOL,s,h,"spi/psd_efficiency.fits",,,"PSD efficiency DOL or filename"
spi_psd_effigen_min_bin,r,h,1000.0,0.0,,"Requested minimum number of events/bin for spi_psd_effigen"
spi_psd_effigen_navg,i,h,2,1,,"Number of pointings to average in spi_psd_effigen"
spi_psd_respgen_outprfDOL,s,h,"spi/psd_response.fits",,,"PSD response DOL or filename"
# SPIROS parameters
#spiros_source-cat-dol,s,h,"${ISDC_ENV}/source_cat_rot.fits[1]",,,"Enter name of catalogue of known sources:"
spiros_source-cat-dol,s,h,"",,,"Enter name of catalogue of known sources:"
spiros_inst-resp-idx,s,h,"",,,"Enter name of instrument response function (leave empty for automatic access):"
spiros_image-idx,s,h,"spi/spiros_image_index.fits(SPI.-SKY.-IMA-IDX.tpl)",,,"Enter name of output sky image index: "
spiros_image-int,s,h,"Y",,,"Enter name of intensity image [NO=none]: "
spiros_image-err,s,h,"Y",,,"Enter name of error image [NO=none]: "
spiros_image-sig,s,h,"Y",,,"Enter name of significance image [NO=none]: "
spiros_source-res,s,h,"spi/source_res.fits(SPI.-SRCL-RES.tpl)",,,"Enter name of output source catalogue:" 
spiros_source-spec-idx,s,h,"spi/source_spec_index.fits(SPI.-PHA1-SPE-IDX.tpl)",,,"Enter name of output source spectra index: "
spiros_source-spec,s,h,"spi/spectra.fits",,,"Enter name of output source spectra dataset: "
spiros_back-det-spec-idx,s,h,"spi/spiros_noise_backgr_index.fits(SPI.-BACK-DSP-IDX.tpl)",,,"Enter name of output detector background spectra index: "
spiros_back-det-spec,s,h," ",,,"Enter name of output detector background spectra dataset: "
spiros_source-det-spec-idx,s,h,"NO",,,"Enter name of output source detector spectra index: "
spiros_source-det-spec,s,h," ",,,"Enter name of output source detector spectra dataset: "
spiros_reference-coord,s,h,"RADEC",,,"Enter output image reference coordinate system [RADEC,GALACTIC]: "
spiros_image-proj,s,h,"CAR",,,"Enter output image projection type [CAR,TAN,AIT]:"
spiros_image-fov,s,ql,"POINTING+FCFOV",,,"Enter extent and location of output image:"
spiros_center-long,r,h,0.0,,,"Enter longitude of output image centerpoint (degrees): "
spiros_center-lat,r,h,0.0,,,"Enter latitude of output image centerpoint (degrees): "
spiros_image-dim-long,i,h,81,,,"Enter output image dimension in longitude: "
spiros_image-dim-lat,i,h,81,,,"Enter output image dimension in latitude: "
spiros_image-pixel-long,r,h,0.2,,,"Enter output image pixel size in longitude [degrees]: "
spiros_image-pixel-lat,r,h,0.2,,,"Enter output image pixel size in latitude [degrees]: "
spiros_image-orient,s,h,"STANDARD",,,"Enter output image orientation [USER,STANDARD]: "
spiros_image-pole-long,r,h,0.0,,,"Enter longitude of output image pole [degrees]: "
spiros_image-pole-lat,r,h,90.0,,,"Enter latitude of output image pole [degrees]: "
spiros_mode,s,ql,"IMAGING",,,"Select processing mode [IMAGING,SPECTRA,TIMING]:"
spiros_nofsources,i,h,1,,,"Enter maximum number of sources to be searched for [0,1,2...]: "
spiros_kofsources,s,h,"POINT",,,"Enter shape of sources to be searched for [POINT,BSPLINE,CUBIC,HAT]: "
spiros_sigmathres,r,h,3.0,,,"Enter lower sigma threshold to stop source search: "
spiros_chilocstep,r,h,0.05,,,"Enter source location sampling step [degrees]: "
spiros_srclocprec,r,h,0.01,,,"Enter source location stopping precision [degrees]: "
spiros_chiwidstep,r,h,0.1,,,"Enter source width sampling step [degrees]: "
spiros_srcwidprec,r,h,0.1,,,"Enter source width stopping precision [degrees]: "
spiros_srclocbins,s,h,"SUM",,,"Enter count spectrum bins used for source location [Blank,SUM,FIRST,ALL]:"
spiros_background-method,i,h,3,,,"Enter handling method of background model response values [0=ZERO,1=FIXED,2=FLOATING,3=FUNCTION]:"
spiros_iteration-output,s,h,"Y",,,"Enter whether output should be produced at each iteration [YES/NO]: " 
spiros_blur-size,r,h,0.5,,,"Enter FWHM blurring factor for output point sources: "
spiros_pixel-func,s,h," ",,,"Enter shape of image pixel or spline function: [POINT,HAT,BSPLINE,LINEAR,FOURIER]: "
spiros_pixel-size,r,h,0.0,,,"Enter FWHM size of image array pixel/spline function: "
spiros_constrtype,s,h," ",,,"Enter image constraint matrix type: [WIENER,CUBIC-SMOOTH,LINEAR-SMOOTH]: "
spiros_constrmult,r,h,0.0,,,"Enter image constraint matrix multiplier: "
spiros_constrincr,r,h,0.0,,,"Enter image constraint matrix multiplier increment: "
spiros_constriter,i,h,0,,,"Enter image constraint iterations: "
spiros_nagoptions,s,h," ",,,"Enter NAG options file for minimization subroutines: "
spiros_optistat,s,h,"CHI2",,,"Enter optimization statistic [CHI2,LIKEH]: "
spiros_solution-constr,s,h,"NONE",,,"Enter image solution constraints [NONE,POSITIVE]: "
spiros_maxlikfile,s,h,"spi/spiros_ml_residues(SPI.-MAXL-RES.tpl)",,,"
spiros_location-max-error,r,h,0.1,,,"Enter maximum admissible input error source location: "
spiros_energy-response,s,h,"N",,,"Enter if an Energy Response Matrix is to be used [YES/NO]: "
# SPISKYMAX parameters
spiskymax_irf_input_file,s,h,"",,,"input IRF file (leave blank for automatic access):"
spiskymax_source-cat-dol,s,h,"",,,"input catalogue of sources for SPISKYMAX"
spiskymax_image-idx,s,h,"spi/skymax_index.fits(SPI.-SKY.-IMA-IDX.tpl)",,,"output skymap image index file " 
spiskymax_image-int,s,h,"skymax_image.fits",,,"output skymap images file"
spiskymax_source-res-dol,s,h,"spi/spiskymax_sources.fits(SPI.-SRCL-RES.tpl)",,,"output catalogue of sources "
spiskymax_skymap_system,s,h,C,,,"input skymap coordinate system C=celestial, G=Galactic"
spiskymax_image-fov,s,ql,"POINTING+FCFOV",,,"Image field of view: SURVEY  USER  POINTING POINTING+FCFOV POINTING+ZCFOV POINTING-CENTER"
spiskymax_center-long,r,h,1.0,,,"Longitude of centre pixel (degrees) [image-fov= USER]"
spiskymax_center-lat,r,h,2.0,,,"Latitude of centre pixel (degrees) [image-fov= USER]" 
spiskymax_image-pixel-long,r,h,0.5,,,"Longitude pixel size (degrees) [image-fov= USER,POINTING*]"    
spiskymax_image-pixel-lat,r,h,0.5,,,"Latitude  pixel size (degrees) [image-fov= USER,POINTING*]" 
spiskymax_image-dim-long,i,h,40,,,"Longitude dimension (pixels) [image-fov= USER,POINTING-CENTER]"
spiskymax_image-dim-lat,i,h,41,,,"Latitude dimension (pixels) [image-fov= USER,POINTING-CENTER]"
spiskymax_chi_0,r,h,-10.,,,"Longitude of first pixel (degrees)[image-fov= SURVEY]"
spiskymax_chi_1,r,h,+10.,,,"Longitude of last  pixel (degrees)[image-fov= SURVEY]"
spiskymax_d_chi,r,h,0.50,,,"Longitude binsize (degrees)[image-fov= SURVEY]"
spiskymax_psi_0,r,h,-10.0,,,"Latitude  of first pixel (degrees)[image-fov= SURVEY]"
spiskymax_psi_1,r,h,+10.0,,,"Latitude  of last  pixel (degrees)[image-fov= SURVEY]"
spiskymax_d_psi,r,h,0.50,,,"Latitude  binsize (degrees)[image-fov= SURVEY]"
spiskymax_energy_range_min,i,ql,1,,,"minimum energy range sequence number as in ebounds file: 1,2,3..."
spiskymax_energy_range_max,i,ql,1,,,"maximum energy range sequence number as in ebounds file: 1,2,3..."
spiskymax_max_iter,i,ql,30,0,1000,"maximum number of memsys5 iterations"
spiskymax_image_default,r,h,1.0e-3,,,"image default intensity, cm-2 sr-1 s-1"  
spiskymax_background_scaling_default,r,h,1.0e-0,,,"background scaling default"  
spiskymax_background_entropy_factor,r,h,1.0e-0,,, "background factor to reduce contribution to entropy"  
spiskymax_background_method,i,h,2,1,2,"background method:1=free 2=fixed"
spiskymax_memsys_iBayes,i,h,1,1,3,"memsys Bayesian method code: 1= classic, 3=ad hoc specified by fAim "
spiskymax_memsys_iEntropy,i,h,1,1,5,"memsys entropy type: 1= standard, 5=fixed total=sum over defaults "
spiskymax_memsys_fAim,r,h,1.0,1e-10,1e10,"memsys stopping criterion: classic: 1/Omega =1.0, ad hoc: alpha "
spiskymax_n_source_fluxes,i,h,1,0,100,"number of source fluxes with errors"
spiskymax_source_chi_1,r,h,0.0,,,"longitude (degrees) of source 1"  
spiskymax_source_psi_1,r,h,0.0,,,"latitude  (degrees) of source 1"  
spiskymax_source_ON_radius_1,r,h,2.00,,,"ON radius (degrees) for source 1 and catalogue analysis"  
spiskymax_source_OFF_radius_1,r,h,4.00,,,"OFF radius (degrees) for source 1 and catalogue analysis"  
spiskymax_n_profiles,i,h,0,0,100,"number of intensity profiles with errors"
spiskymax_profile_chi_0,s,h,"180.0 180.0",,,"Longitude of first pixel of profiles (degrees)"
spiskymax_profile_chi_1,s,h,"200.0 200.0",,,"Longitude of last pixel of profiles (degrees)"
spiskymax_profile_d_chi,s,h,"  1.0  2.0 ",,,"Longitude binsize of profiles (degrees)"
spiskymax_profile_psi_0,s,h," +2.0 +2.0 ",,,"Latitude of first pixel of profiles (degrees)"
spiskymax_profile_psi_1,s,h," +2.0 +2.0 ",,,"Latitude of last pixel of profiles (degrees)"
spiskymax_profile_d_psi,s,h,"2.0  2.0",,,"Latitude binsize of profiles (degrees)"